Scaffold Ga0172373

Overview

Basic Information
Taxon OID	3300013131 Open in IMG/M
Scaffold ID	Ga0172373_10000195 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	93789
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	87 (69.60%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Democratic Republic of the Congo: South-Kivu
Coordinates	Lat. (^o)	-1.64	Long. (^o)	29.05	Alt. (m)	Depth (m)	10
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F016958	Metagenome / Metatranscriptome	243	Y
F040535	Metagenome / Metatranscriptome	161	Y
F056609	Metagenome / Metatranscriptome	137	Y
F057416	Metagenome / Metatranscriptome	136	Y

Family

Category

Number of Sequences

3D Structure?

F000264