Basic Information | |
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Taxon OID | 3300013127 Open in IMG/M |
Scaffold ID | Ga0172365_10086315 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 2016 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Western Province, Lake Kivu | |||||||
Coordinates | Lat. (o) | -2.05 | Long. (o) | 29.2062 | Alt. (m) | Depth (m) | 388 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033362 | Metagenome | 177 | Y |
F036698 | Metagenome | 169 | Y |
F063706 | Metagenome | 129 | N |
Protein ID | Family | RBS | Sequence |
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Ga0172365_100863152 | F033362 | N/A | MKMIPITQFIEVIKKHGALGVLALWLTYTHFEVQDVKERLYKCLDEREAINRKPIEEKQPPAPVEKNDTVAILDNKNRKLAKKTV* |
Ga0172365_100863154 | F063706 | N/A | MAKKAGRPKKVQVNIEGDKTDVIIKTNKAEIEYHKDGMNHELDYDGKKVDVNIKKDETGTKVVVEAENKFLKAIATLASKFFVKRFNKKK* |
Ga0172365_100863158 | F036698 | N/A | MNYHYRVWLEDQVEIKGGFWWYCLIDSNGCLYDPKYPNEERDTVEWYINNGYKVEKIWA* |
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