Scaffold Ga0172365_10085177

Overview

Basic Information

• Taxon OID: 3300013127
• Scaffold ID: Ga0172365_10085177
• Source Dataset Name: Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2033
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province, Lake Kivu
• Coordinates
  • Lat. (^o): -2.05
  • Long. (^o): 29.2062
  • Depth (m): 388

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F041769	Metagenome	159	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172365_100851775	F028157	AGG	MTADTDYLSPRFITVMGDHDGHARWVGQIDCTDVMNAYRHGGVYLLVCLDQEGNLFIGFKPGRQWEASWSPPITLERR*
Ga0172365_100851776	F085645	GGA	VNGSEILTEAHGLVNGPRQDTYSHPFDDYYKVKELFYTMTGHQLTVKDAVTFMICVKLARISTNAQQGRWHRDSVVDAAGYLACLSMVHEYVQDQIAATVTRLRDADDC*
Ga0172365_100851777	F041769	N/A	YCKEQQMSYDPDALRQMNEEAQLRISELSVALAHVTEQRDNLEDSLQSAIREVDAYKQHVASLNATIERLRLHIQQGIEL*