Scaffold Ga0172365_10055659

Overview

Basic Information

• Taxon OID: 3300013127
• Scaffold ID: Ga0172365_10055659
• Source Dataset Name: Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province, Lake Kivu
• Coordinates
  • Lat. (^o): -2.05
  • Long. (^o): 29.2062
  • Depth (m): 388

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172365_100556591	F057213	N/A	SRMGREDRATDNTDLREQFTKLQRDLASKERALRTKELDSEILRNMGEKFDPDLQEYALQKIKSNIKMNRDGSFVIVNQKGQERYGMDGNPLTLNGLVNEVAQGNPKLLKGSSSQTGSGLRMGQTQFAGAQPDAIPDYSKDPAAFNAWASRQGLGKGIGLKGAKVGVSVSALSKKVL*
Ga0172365_100556592	F011761	AGGAG	MAYVLGGANNEADGFTTAIANFALRAMHESTGLVDYTTVVAPNQGNQYLVPQFAPITYQDYNPNTGAANAGFGNAPAAFEQNPALGQGSITATPAVAATAFDIFYAWTTSFELAATLGAELGESYGEKVDIRVCEAFESFKATPSNTNYSPTPADGFARPTELGAMELMYAGLPANTAGWTTGFTSNSVLELIRNVKQNYKVARLPGAPIIVLDSNGDVQGGNVAGQDGSSMNRLLAELTGGAVNNPTYGGGSQVSALGNELLATGKLDNVYGCKVAFTTFLPSATRPVLGQGSNSNVLVGAYFHETALITVLKEGLQIKMGEKPGGLQMWLTGVAYMGSGVADPRRGGAINIFQS*
Ga0172365_100556593	F002260	AGGA	MSVPYQRISNATVQDIIFYDPAAERRAAQMQVNWDDYFKVGSQEILYQMEFGWWPKYCDTVLGATYYTNLPNGALISSFNPSLLIKNDQTLIRLDTFMAVKIFYESIVSDVSNVNDVDKVNFDHALRRYQYEWEKALQLMNWYDLNQDAPNGPTTKLEENWTADVDYFNNDRRYF*