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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013127 Open in IMG/M |
| Scaffold ID | Ga0172365_10000008 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 116890 |
| Total Scaffold Genes | 138 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 118 (85.51%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province, Lake Kivu | |||||||
| Coordinates | Lat. (o) | -2.05 | Long. (o) | 29.2062 | Alt. (m) | Depth (m) | 388 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046955 | Metagenome / Metatranscriptome | 150 | Y |
| F078535 | Metagenome | 116 | Y |
| F099078 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172365_1000000824 | F078535 | AGG | MTNSLVKFTSHKDGNGRGQLYWERADIDGLPFRGQQPPLLRNEEYEERVVRVADPKNGTFYTGDPEQNAVYLKIMDGIANSWYQLVFIERWRIDGDKFHHIYVEWLEYFLEDGKPTPYTPNL* |
| Ga0172365_100000084 | F099078 | AGGAG | MDTSCLYSTVKNVSGTAKTFGFLPPHGRTLANNEEFTVFGDIRQNLGGNQGGERSVQRRANAAFEAAVESGDLEILNTPSPILQDTVTDAPKMLQLASGSLSTVDPCWYNSES* |
| Ga0172365_100000088 | F046955 | AGGAGG | MPAPRQMTANTLNALKGWPQMNAVDYHAAFDSAIPSGDLPVLAGSVVSLNPSGNFILGVGNSAVMPMFLFNNSDDPDVVNDGGDASTTPGVWIPISPTGQAMALVAVGAYELVSTAFVAASYPPNTPLTANKSGSANPGKLRAGTLYTNMIVGIVSRGVVDNGYGKSALAFWPFPVFPN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |