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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013126 Open in IMG/M |
| Scaffold ID | Ga0172367_10103593 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1995 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
| Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001176 | Metagenome / Metatranscriptome | 756 | Y |
| F001280 | Metagenome / Metatranscriptome | 732 | Y |
| F035764 | Metagenome / Metatranscriptome | 171 | Y |
| F061853 | Metagenome / Metatranscriptome | 131 | Y |
| F076961 | Metagenome / Metatranscriptome | 117 | Y |
| F084237 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172367_101035931 | F035764 | GGAGG | MIDWLVNKIFWWTPLRNALLAEATFYNSLTRIMNDPESMKTASAMWDEGDGWRGWAIEGGKYYFNDIPEHDMIDLMQ |
| Ga0172367_101035932 | F084237 | AGAAG | MTEMTSVGDDRDRSMRLKSAIEEMLKDIDMSGEEWNDYDKDGVPYWENEGGIVTEKHLEDYEERLKYMEENGI* |
| Ga0172367_101035933 | F061853 | AGGAG | MNKKTIGLLSLGLALAAIAYVTYNSLSQLKDIDYDLFDIEEDEDD* |
| Ga0172367_101035935 | F001176 | GAG | MSNNGTGMDTPPNSQPSGAVTSQEATRKNPSQGKIRSGFSGPRPATKIDTNKHGIRRETVIGQKKTRPKKV* |
| Ga0172367_101035936 | F001280 | N/A | MCIECGCESVGSETGIAKIPGGILDVSRDGESGLTLNMTATPQQRENFINE* |
| Ga0172367_101035939 | F076961 | N/A | YTVEDYIQDKVRRDIIKEIRNLELPKEWEPQMVIDYIIRKIDKNNV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |