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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013126 Open in IMG/M |
| Scaffold ID | Ga0172367_10034729 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4309 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (44.44%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
| Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007359 | Metagenome / Metatranscriptome | 352 | Y |
| F010746 | Metagenome / Metatranscriptome | 299 | Y |
| F020860 | Metagenome / Metatranscriptome | 221 | N |
| F022820 | Metagenome / Metatranscriptome | 212 | Y |
| F035200 | Metagenome / Metatranscriptome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172367_1003472912 | F007359 | AGGA | MQLVKQNLGAHWVIGIKGSKDRIEQFHNRVYNWGGTNGELQWMSEDFAYFWITLEKLERVMFKYVMNGISDKLGKKFRNSKGGLKEVVMNRVRNTINNIPVENFVRTAQVQEFYSIGQVTAERLDEDS* |
| Ga0172367_1003472915 | F022820 | N/A | MKHSNRIGKIIEKRILKDEDPKLVAQIDKFLTELEVVFHKWAKAHPNWKESEE* |
| Ga0172367_100347293 | F020860 | N/A | MNITKAKKLAEGGYALYTTDPKTKTEIQVGYIGENLTLEAWLPAGVKIENS* |
| Ga0172367_100347295 | F010746 | AGTAG | MTYRCAVSGEAIPPERVEALQVLGVPEALWTEKEYSQVKKLKAVYAGDDGSNDILICDNVDGGSLFDNEIVAETENDI* |
| Ga0172367_100347296 | F035200 | GGAG | MISKFIVLRDGVRVSDDMHETEAQAEQEADFWREIIRRWPDGTKVTIKKIGR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |