Scaffold Ga0172367_10031735

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10031735
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4590
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F020347	Metagenome / Metatranscriptome	224	Y
F085168	Metagenome	111	Y
F102570	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1003173511	F085168	AGG	MWRSIRILLWQIVSDWEHRLYPYEKEDRNDYYYTVKNEDTGESYMIIEWIKSFDERIQRLQDEMLYVQSEIRSLKK*
Ga0172367_1003173512	F102570	GGAG	MMIRKFIDWFFSPSIKPLVEDHLVIDEFYQRFVDLEQRVKVLEEENVGTTNELYRMENSLDARIDILAEHCRINTDV*
Ga0172367_100317352	F020347	GGA	MSSKTYLQYVAIPALAFFFSAIISYNLTPERTPQHNSTVSGSSGDLVCTSSCVVKEK*
Ga0172367_100317357	F004546	GAG	MDHTEEFPFDQFPWKLVYKDGNETHKCYFDSEHNRQKHIDRYKLKKKEIKLTHKNQDYGD