Scaffold Ga0172367_10029024

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10029024
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4891
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F012013	Metagenome / Metatranscriptome	284	Y
F018349	Metagenome / Metatranscriptome	235	Y
F068492	Metagenome / Metatranscriptome	124	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1002902410	F000868	GAGG	MSDPHGIIDPYRKGGSMSFLDNENQMVIDAEMSYIGEQLVEDWVNSNLDEGVFYADKCFAEMCDSNYLKGRFNQFYDLNPGDDDYIEVEEDQ*
Ga0172367_1002902412	F000450	GAGG	VGDRANFGFVQPNGNTIVLYGHWAGYQMLGKLADAVIKARPRWNDPAYATRIAISQLIKDDWNSETGWGLHINEISDNEHKIAVIDWDQQTFSLHEEDGRNNTDNKVNGMSNKPLFTMDLSTFCEKYALDAILTV*
Ga0172367_1002902414	F018349	AGGAGG	MDYKDGFEDGVKFTREVIINNIRAWADTHENGDTLDWVADKIEFGTLDNDL*
Ga0172367_1002902415	F000311	GGA	MYFELTAPDRLSLEMAYWEAQTSGLDPEFMPPLTFNIGTGSIEKVSRIIDKFNLKETYVAATQPTGYAFRRYDGL*
Ga0172367_100290242	F095357	AGGCGG	MATSKEIKVGELLANSVEDHWFNPATLGHYLSQQPNWTIDRVMEVVLWIIEKNARIYEGKAGKQEVSEGLALAYKLDQLINRIKATNQFNHIHIP*
Ga0172367_100290243	F004666	GGA	MIMKGSIMNKREYLASKGITIGRRGRFSSAATQALREAEQQGIKFTAEAKAPKK*
Ga0172367_100290245	F001019	N/A	MTCNKLRRRENRMNYEPALEILEVEYSCSPGGIDSYEVYDKNDSDPVSLPIYETESLTEAVEFCYNLGQDFTVRTVAAWHKREAEYEAV*
Ga0172367_100290246	F012013	AGGA	MTEMTSVGVDLQEATRRDDAFDQMLQINKMLSDVSVFPSLIWVWTFDVIKYIFDNNQYKDLAVNDYVEEAVPEGITLKQIWDKFWEDVDDIGLSMDSGGEIIEEVIRDWMRDNDFLVSLDDDGWLDD*
Ga0172367_100290247	F068492	AGGA	MYSTNLEPRLQKLVDLGESGTDIMHGELKNLMYKAEQEFLQAQQIEEDNDYSDAMESMERKYWEGQMDALEHLYALTYQLAFAITERKKK*