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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013126 Open in IMG/M |
| Scaffold ID | Ga0172367_10026466 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5215 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (57.89%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
| Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003331 | Metagenome / Metatranscriptome | 493 | Y |
| F004546 | Metagenome / Metatranscriptome | 433 | Y |
| F010525 | Metagenome / Metatranscriptome | 302 | Y |
| F020347 | Metagenome / Metatranscriptome | 224 | Y |
| F102116 | Metagenome | 102 | Y |
| F102570 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172367_1002646610 | F004546 | GAG | MDYTEEFPFDQFPWKLVYKEGNETRKCYFESEAHRQKHIDRYKLKKKDIKLSYKYDN* |
| Ga0172367_1002646613 | F102570 | AGG | MMIKRFIDWFFAPSIKPDFEDHLLIDDLYNRVSELEAKVKVLEEENTETTNELYRMENSLDARIDILAERCRINYDV* |
| Ga0172367_1002646618 | F010525 | GGA | MYTLYMLQGLAPFIGGMCLDNYLHRQGELCNIRDYPPNVVKYDKPKPEDSCYKDGIFYPRCKDLENPEVLKYHNLLYGQK* |
| Ga0172367_100264663 | F102116 | N/A | MKPVTNLINKLLSIFNLKLVSTKPDTRLVKETVKFLDQHKDYWNGDVFFPPYVGDINYVQEWVEGEFPQVSGGTYICERVLGIEDKYYDYKGDIFTSQQLQEKLK* |
| Ga0172367_100264665 | F020347 | GAGG | MSSKTYLQYVAIPALAFFFSAIISYNLTPERTPQHNSTVPGSSGELKCTSSCAVKNDPN* |
| Ga0172367_100264666 | F003331 | N/A | MTLTEKAQIYKNVWCCAYRRRHEALLNQDYERYQGEHQTLLMCLKIATWTTFDTEKPKVLGW* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |