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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013126 Open in IMG/M |
| Scaffold ID | Ga0172367_10025616 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5343 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (46.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
| Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004475 | Metagenome / Metatranscriptome | 436 | Y |
| F017788 | Metagenome / Metatranscriptome | 238 | Y |
| F054581 | Metagenome | 139 | Y |
| F098668 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172367_1002561614 | F098668 | N/A | MMKNISNLISESGCFKLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIKDIEKELIK* |
| Ga0172367_100256162 | F004475 | AGGAGG | MNNWTEELNDKQKEEVWNFIVFTVKEIREQIAKDIEATIPLWKEKGMLKSRRTQKAFEASAAIARGQNEQING* |
| Ga0172367_100256166 | F017788 | N/A | MKKIIIASLLISLLIPVSHAGASTKSLNTKANKAACKNIKTKYQSEVMFKWSNGLAADQDVLKEIDSNINMLIIRQKNTSGKIKITIDSWIGTEKSTKDALTKKDVVSITNAMSLKIKAITQFDKICKSIGA* |
| Ga0172367_100256169 | F054581 | GGA | MCPYCNRPLIPILYGYSDAKYVDMHKQGLVFLVSTTFHTKNDPTSYCKKCKESFNIKLEYIF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |