Scaffold Ga0172367_10016524

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10016524
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 7270
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F018684	Metagenome / Metatranscriptome	233	Y
F052382	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1001652410	F052382	N/A	MSSYGKRKGATFETGVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEIPYKFVIIKRRQVGIDKAWVVEDFEQWTKRAGK*
Ga0172367_1001652411	F009064	GAG	MIIQLNKDEVRVCTLLAVERWLAKFGSTDQPNYAQGKADGRLEPEINANIRANVCEWAVAKHYNMSWNVPYYPNALHKKRYSLPDVGENIEVRSIRTQDSIPFWGKDKGKVIIGTKCLDTEYYSEVEIFGVAYPEEFTKPEYYDSYINGWRIPISGFTHE*
Ga0172367_1001652413	F018684	N/A	MRNTMANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTTSSTTSTKPSKYSAPTPVSAVSGTAAPLCKHGGRIWREGISKASGKPYAFWACPSPQGTPDQCKPVN*
Ga0172367_100165245	F001531	N/A	MGDCGSKLDWDNIKKWDYIVTAVASEYHKKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSIGYDISDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFIGRPSAPAEGGNLTIMMLEVDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYKDVDSTGEEPEDEYQPPVE*
Ga0172367_100165248	F008808	AGAAGG	MDRNIPPCPECGKRFKNVFEATDHILEDNEEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPEAIKDIVEEMIIESQMMEIDNELKQLLEKGE*