Scaffold Ga0172367_10015694

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10015694
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 7539
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023555	Metagenome / Metatranscriptome	209	Y
F025977	Metagenome / Metatranscriptome	199	Y
F048942	Metagenome / Metatranscriptome	147	Y
F068754	Metagenome / Metatranscriptome	124	N
F071153	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1001569411	F023555	N/A	MNNNNLRKEKEREFYMDHMNTFKAIGLADPFFTIKTAFYKKGKFGRQSQFFEWELKKGEDIYIEFYENTYDNDGRSTGIVPMLAERQLFKLKYNPYFHEEYDVTETVDPDGKVDRKYLIPVNELSAVLTNGQEISYALYEKRKEEAALEIPQLQSTLSIFPDFEEEFTPKTKETSNEVSEILLEIAENFKKLATALKSK*
Ga0172367_100156944	F068754	N/A	MTPFFRGTQSDTYFDIKTYQALKVFELMKEIKELVAAISEEHYNMTDGHDNNLNYLWYMYHKGTKKDDFRPFIYMAELMLLKKFEYLTETEVQNVVKMMKSDDKDNLHIATLTIKNLRDLRIKEKGVYSKENANYTQVRQTYGFEILNHTVFMETMMEK*
Ga0172367_100156946	F071153	AGAAG	MFSGRFIKKNGKLVFNSPKDKLSYEIFVDKIKEGQVVEMYIDLVGTDHSKAQLAKVHACIREIAKESGYTFDEVKGIVKDASGLTGKSFANCSKDDLMLAIESCVQIGREQFNLNLG*
Ga0172367_100156947	F048942	N/A	MIKAKELKDDAILDIKVNKSYYLMAKAASFTILQQMNIADKGEEYFKSIMTQKYENLDDLQRAFYTIILLLAEIEKKATDENLYTEREILEPGDEGYIEPTQDSN*
Ga0172367_100156949	F025977	N/A	MEDVFIKLVRENITPNSYYILYCIKDGIVPCSFVNKDLEIRRLISENWLNEDLTLTDKSIIFTTEIDGYFKKSKKKTSKDLMGHNFMQNIEAYVTIFPNKKLSSGKYARVPAKGLENAFRWFFDTYSYDWETIFAATQKYVLEYESKNYEYMRTAQYFLRKQNVDKSWDSDLATYCEFLKDNPDDDVVLFSDLIV*