Scaffold Ga0172367_10009236

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10009236
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 10852
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F011482	Metagenome / Metatranscriptome	290	Y
F020531	Metagenome	223	Y
F027488	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000923611	F027488	GGAGG	VSIRWITKVWADSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLIWKKLPNSVGEEESLGGVELPNSDTPNSPTLEVQLPNSTPYHPSYTSVLSTTKSDETAIAVIALSEVVARKWWEKQRVKPLGKNAWHSLLSICQAAEKRGYTAEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIDLAEKFRNESF*
Ga0172367_1000923612	F020531	N/A	MNLSDISILIGFVGIYDLRVQIDEMKVRAWAESLDFDLPLEDAKKIVSWHYANFDSAINPSHINREWRRRLADSRERERSRLMSLEFEENEKKKASPEFVAQIKKELLEKLNRGKDAPLEDDNGQVAPNS*
Ga0172367_100092362	F006261	GAGG	MATISSGYTTTVPIQISNPENWSFVAPEDPTIKITDINVTQPLNSSIVESYGVFKPLGANKTVVVSQSIYGVDGAYEFITQGEDEWDDLYPVLTYQGILHVHDPLGRQKYVRFVDRNWTETGNIDSLVRRVKVTYFEVSAP*
Ga0172367_100092367	F011482	AGG	MSEDIKPSLGEIMRRLDDLTMEVKQMNLNVSQTYLRKDVYDSDSERFAQAMEHITDRIEKMENRSEWVVRTVGALMIATIVGASVYVGQIIGF*