Scaffold Ga0172367_10007971

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10007971
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 11957
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F003459	Metagenome	485	N
F004837	Metagenome / Metatranscriptome	421	Y
F005845	Metagenome / Metatranscriptome	388	Y
F011581	Metagenome / Metatranscriptome	289	N
F012656	Metagenome / Metatranscriptome	278	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000797110	F003459	N/A	MNHLVSIPKSDISKAEIADIAASLTLRILEGEVNPVAAHVRLKAVIKALEQVLKSTEDAVRDEAEKHGKTFSAFGADIQIKEGSLTPDYSCDKEWANLNSMMKGREEQLKMAFRNAGKMTVIDEATGEVVPICPAKGTKPSIAVTFK*
Ga0172367_1000797117	F005845	N/A	MKPTPTDFRRWQLHIRKECVNCPKPDHAETISPWRVNWTLLGRILQAKNA*
Ga0172367_1000797120	F001345	N/A	MVSADTVILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPDKILQIYSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEQLDPDAEIPQAEYDSLMDDLWTIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQSHGHADISPAD*
Ga0172367_1000797121	F004837	N/A	MNQNEFLLAQKHRHYWEQYQASLFMRLSPEAVGDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAQDNQQTVTHALTNPKTPRAEG*
Ga0172367_1000797123	F012656	N/A	MDSLMMVISTLCDCIAAIDESNAPNGYAVRIKIVDKIDQLIDKIEY*
Ga0172367_100079714	F011581	N/A	MAYYSLRPAEALTNALERLMIAVSNTELEQNNVALCEYRRACELLGYDPKMAQWAGIKEVHASGLPNDEPYTVDYYPLLNPEE*