Scaffold Ga0172367_10004075

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10004075
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 18441
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (70.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F008812	Metagenome / Metatranscriptome	327	Y
F056376	Metagenome / Metatranscriptome	137	Y
F074795	Metagenome	119	Y
F074805	Metagenome / Metatranscriptome	119	Y
F088817	Metagenome / Metatranscriptome	109	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000407513	F088817	AGGAG	MDGYQLIEQLNEIVKDMVLVPNSWLPENFQDHRTDSVSLADLENKCDSMERCETDHEEEKREKARRVELYREMIQNGQEISYLMKGK*
Ga0172367_1000407516	F074805	AGG	MNDVVVIGGIFAAVCAVSLVFLFNAVYGGSKANLANAAEGQVFNFTYEQPLHGTHERFLAKVIGKQTLTADQIRRLNSKSRYRANDPEFIRTNHLVTCRTADGKVRNFYAERVTNCRKPLLAGALFGSSVAARLF*
Ga0172367_1000407521	F000325	AGGAG	MKTANGNDKLGKENCIVVSRPVGDTCPPDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRAMLVDAVKKNKDVRWHERGDYFKDGKLDHEYVDNILWACESILADGGSLPTMWAYTHIYDARLSTELGKYINMYASIHDGEDMRQAKAAGFKLFAWCDSDTKIAPKRPRGKAKAAAWRAELPKLVVLEGEKFITCPEIRRGRGVVTCTATKSSVHCDLCPRGLANVLFPSH*
Ga0172367_1000407526	F074795	N/A	MTKQEATIKILKVLKNAMLIVNKHNRDEALTLAEEYGITAKELIETWADLAMRV*
Ga0172367_1000407529	F104766	AGGAG	MEWISFFDRQPENGQGIWYYGPMIGVWAGEYNYSPNDPVSPHIMHCHESFGVVDRMDAPWWMPDDGVMVRPQRPTQEYPSDYPS*
Ga0172367_1000407531	F006543	GGAG	MKKFSFAVDIVADDLDRDGVVDSIRECLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKIAKEEAVA*
Ga0172367_1000407533	F008812	AGGAG	MIQWIGVLVALLGLAYTGVKDYQKGDIKLPKLPQKQLTKPVYPIQYCLMAYDPNIDKIFYLHENGQWFDYAPPQRRYSTQPQNYQNQGQATVGTAYGTQAGSQGYVYGQQTQATANPSRY
Ga0172367_1000407545	F056376	N/A	MQKEKFDCFSYVHGHKNAQEIVTDLNGMKSAESDPFYIQYDRNKDYSGDDSYCIRGSVTEKDWDELDLSSDFMRI*