Scaffold Ga0172367_10001632

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10001632
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 32001
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F032258	Metagenome / Metatranscriptome	180	Y
F066605	Metagenome	126	N
F069861	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000163222	F069861	AGGAG	MAKRKYTGNKDGAAKGLRPGMKVFIEETIKLSNGALWNNGDWGVRPMRGKESLSVHATGRAVDLSFRHMPPKKGVKNGRLEALRVLKIIVANADALGVEAIFDYIVKPHGRAWMCDRAAWSNYKKETIHGGGSGDWLHFEVSPEMADNPAKMREAFANLVIPDDSQNGQEE*
Ga0172367_1000163231	F004761	AGG	MADLDEVDLPDSVIDQFAREGFQRIYSLERRWPWLQETYTFNTVADQREYTISTIGDIREIISVVDTSTSGARLTLIPYDNAEEIWLGNTDVASRPYFYSFWDKKLQLWAKPDAIYPITVRAYRNPVYTWLTDVNETIDIDEWFHALLPYFVLARVYQRQEDAQLSQMYMNSFEEGVGLARRDLMKASSAQPVIMSAGRQYPTMRRWLQTLGATLGQ*
Ga0172367_1000163232	F032258	N/A	MKNAVPAHSYYGQPVSGIRLAPTAGAKIAAPSAPYIGRNRCIANEDTCEGPKARGTDYCIGHLRSKGQAK*
Ga0172367_1000163239	F001396	GGA	MEMVVVPILVAIISGPLVVILQKLRKENTEQHAEGRILLKMIGNKVDKIGTKLDQHIGWHEGQND*
Ga0172367_1000163240	F066605	AGG	MKEFRCLECLSTFESDELPRRGSICFKCHVKTIRLGFTYGQEDFHGPTVKERADEQVRVAKEAGINAEPVGSRWI*