Scaffold Ga0172367_10001623

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10001623
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 32130
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (72.62%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F007110	Metagenome / Metatranscriptome	357	Y
F012658	Metagenome / Metatranscriptome	278	Y
F043359	Metagenome / Metatranscriptome	156	Y
F074795	Metagenome	119	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000162312	F007110	GGAGG	VFCKYCDSQIDYERYTFLLETNRTMVCKSCSVENRAVGFMDWNHKTAPSLVMVPANANETIRILQRANKRGR*
Ga0172367_1000162344	F043359	GGAG	MEWNNSHKNPPAVGQKIYYFGPHIGIGIGHYSYQEQTLYAESKNPIELCPHLFENVNWGLVDACDAPYWLPYDEERAKSWCPIIPEKYTKDLYD*
Ga0172367_1000162346	F074795	GAG	MTKQEAIIKILKVLKNPMMVMSPAKAEALTLAEEYGITTKELIETWADLAMRV*
Ga0172367_1000162356	F086678	N/A	VKQVPKYYIKCGSLELIYSCNKVPRDAAISSIWETNDDDVLDEFFYIDERGYRDYKTADGFTTVLHTSHILKDAGWTME*
Ga0172367_1000162359	F000325	GGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSTCLYLGNGCYAEQTEKMYPNVRPAGMQNVITEKHRIRAMILDAIRQDKSIRWHERGDWFLNEQLDTDYVENVTWACESIIAEGTNLPDMWFYTHIYDSRLIAMEKYMNVYASIHNSNDKDAAVAAGFKLFAWCDSDEKVAPKRPRRKDAADKWRKSLPKLVVIDDTKYIVCPEIRRGRGVVTCTKTKGSVECDLCVRGLANVLFPSH*
Ga0172367_1000162378	F012658	AGGA	MNSLDKILAAMRCGKYVGVIDPKGKAHCGLVNSIMREDGSGKNWIVTMTNKTVVERVFIHAT*