Scaffold Ga0172367_10000638

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10000638
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 53666
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (91.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F015212	Metagenome / Metatranscriptome	256	Y
F021091	Metagenome / Metatranscriptome	220	Y
F097447	Metagenome / Metatranscriptome	104	Y
F098749	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000063811	F021091	AGGA	MNDWKKFTDVNGDFQLANFLYKTINDLMKQSLDMGTLLSNDPQKLRAFKEQTKKLFKSKWFEIADSLEFFDLIEKCICFNEEKDFYCEICKGSRYKISSYLTSDEIREVGIFYNAIQNAEVASKLQKGLMKALDELSQM*
Ga0172367_1000063826	F098749	AGGAG	MKLLIGCPMYKRSWILPHWIRCIINQSVSLKDIGFVFEVSPDDIETINSLEAWKKYDNRIPYFNIKIRNDIPHFQHENNGRQWTISKYENMVSLRNSLLKTVRDIGPDYYLSLDSDILLTDPNTIELLMAHVKSGADAVNPLMFMTPFGTMYPSVMTWRSDIAKKAFRQEKYSLGTYFKSDVIMAAKMMNKKVYSNIDYNVHEQGEDVGWSWSCKEAGYNLYCASYIYAPHIMSELMYNQYLKHGDERSQLISENYAKV*
Ga0172367_1000063828	F001360	AGGAG	MSLAKFRKVHSKTGAGRFVVSEGVAPSAYLLPHPGLPTWYLDSEDDRFEIVIPKGTILSVVADSNGDARVVPANGTSSNKSWGDVMPDWDPQDGATPTSTSGSTDAVTVSARSIPVGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVAGINDDVTVGSLIRSDFMGRPVAAAAADFYNSSAVYSYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRSGSYNGKLGIRANLDVYNVVGAFRVNLTL*
Ga0172367_1000063832	F015212	AGGA	MSTSYPGTLDNFVNPTSTDKLNSVTVPHHQQHADLNDAVEAIETVLGLSPAGSHLTVKDRIIAAESSIATQSVLNGLTDVTISTANPGDVLRYNGSIWVNYNEENLVDGGNF*
Ga0172367_1000063839	F097447	GGAGG	MAIPGVKTLIRDRFYSVSRQDTPVGPRIVAIARRSTANNTGSVADLDVVRVTNEADVITAFGDGSDAHRAYLELVLAGAGRIYIVPLPSDTKWDTDPTSPTSTGTVTSSSYGGSVFDAAFTAAEAAIPDMIIPWGRGAHPNDWQDPATPSDDASYGFVADNTSTVASNWAYQVAAKVKDISENINPCIAIMGIKPYYSTTEVMTPGQVSTHLALTQLPDRNASSLFKEVGPYVVVVAAEVKPVNYQSGTTEFGYANGAAHIAGALSLLPSYSSLVNKALYNVEALRYAPSRTQQSTLGGKGVNTVVVNFNKIPVFGEGLTFGWATSDYTRLSTKRIIDDATSVVRQACQRFVGEPSNIQTRNAMETAITSGLRGMQIVGALLGSDFTVSYIPNENKAIVDLILTPAFELKEIEVRVAINL