Scaffold Ga0172367_10000520

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10000520
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 59399
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (72.88%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F026542	Metagenome / Metatranscriptome	197	Y
F099177	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000052011	F026542	GGAG	MNSSTLEKLQEMLQQFLGPQLKEVIDAYNDNNNSYKYFIEIPETDVVDLGIEKIASLVARTSNVYGRAARFAGIARAQYKILEGKYKKVYKSNRVGKNEAEREAAAMDAAEDEYFALVTCEAIVNLAEAMESAARIASESARKLMDKIQSMQVASFREDKGSFMESDFFNTY*
Ga0172367_1000052012	F099177	GGA	MTSYKEQYYSLAEEEMQKLIADSKKGSQKSQEELLKVFSNFLTKYISLLYHGKYNLNDYDIRRFVSLFIKEPSARFALMKNKVNSYNLKIVNETMRGIHYMTKRYGDEEDIRQTVYMTFFQCVGRYERKDSAKGPIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLDDEATNDESDEDYVVGFKADPIEYSMERLMATDRIDEFWVLGENVEGPFDKLSIQERQLLKWRYVDNKRSSQISQIVNEHPNTVREHLSKVREKIKQTLLEDEFSYEELYYLLKMENK*
Ga0172367_1000052018	F004789	GGAG	MSSLGPTVNPVQKWCWSFCPSCNRCQDKGRYTRCNGCSGRYDPDLRIPVDNEDFCDCKNGVLRWKTQQGKLIVTRFKSNPFKGQVKYEKKTEDERDWDSYVKDMREKLDDPSWNPITIYEE*
Ga0172367_1000052020	F012571	AGGAGG	MDNIKDPDDVVGVCSECHSDQPDSYMYKSPFAQEGKPVPCKYCGGVVIITYREIRDQALNDSNRGRGI*
Ga0172367_1000052045	F007312	AGGAG	MATFYVGPRPVLKGRSSSEMVNPYTTMTGKSKGTGTYSFYPLYSTSHVLDGAPDNHYVPGTGEHPGNRFLSQVFNGTTLYIHPLSGTFADGSATYDGARFRPLEYKGLAGAKAFPSDYGHAARADREYSLYNNYIFDGVTSANIFANTGHGPRTEAGGAPATFGLFKPSEFQGVTSSVVFTSGYGQANITGDYGREKVQEWYGVPSAKAL*
Ga0172367_100005207	F007028	GGA	MPKITKTAMEQSTDSPLDQVVNLLSNEISLTSSPIVICGVNRKINIGNFENIDVYAGVTIPLHGVSFEDKEALTAAVEEAVAYGFSLASKETGERYMLIKESQQGTK*