Scaffold Ga0172367_10000371

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10000371
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 68863
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (36.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F010682	Metagenome	300	Y
F023840	Metagenome	208	Y
F039113	Metagenome	164	Y
F048284	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_1000037147	F039113	N/A	MDSTLREIKEIRDALQSIDTSLQIIASDNTNNRRTTAFVSKKIICQRLNIPGIALDKLIYQGITSGGKSGLVEGLHFCKIDPTEQNSSKFLYDPQAVIHSAWFNFQNNV*
Ga0172367_1000037153	F023840	N/A	MHSQDGQLVVGLTLEDDLVLTRLKNKACNLKGNARDQYLWKTIYRFVCRERAYKSVMGEYGVAIDINIDIFEEECDE*
Ga0172367_1000037155	F008401	N/A	MLALSYLQQILANVITSTAFNSPTPMETARLLTIAQTAELLNCSAGFVRKRIALTESNQPGGWPKGIFVNLQPNGAKSLYRINQDALQDYLKSDVEASPEEAKVEVSTACTL*
Ga0172367_1000037167	F010682	N/A	MVYTPFTNWRYDKNLYHRVQSGPQRTSDDLNFTDTYAVVGSGYTYPSGTQQTWFGVNYQGADFGLIPVGPVNISGYLNTDWRAVPPAVSGYWSNYENVLPHASGLLDTYLGYRAQGLYSVAGRTVQTALSPQPGLRNFGVYTWFGAGIPDNQNYAPFKTPSSNEPYRYDEDTGEFVGEGITGGPGSFQRVRYPSLTNPTNDTSGSRAAWIYNYPVYCQVFTEAVRSTAPGQMSVVTRTNYRGKSTRYVPNYGSVYGVLGEGVRNMIRRVGPSS*
Ga0172367_1000037186	F048284	N/A	VFSQADYELAARVLGLPMPQTPAEMAAATPITARVVREFARGLPSIPGREGEGIYTGPTRSLNSYPDNNKPMLHAQLASRLRTEPERPHEDVYLMQLLSELEPDEVNLILQLIEALSDQSDEHMDQLSSQRPLEYDTPNLGANYSVLNAPSSSHIPPSQEYQELG*