Scaffold Ga0172367_10000057

Overview

Basic Information

• Taxon OID: 3300013126
• Scaffold ID: Ga0172367_10000057
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 159586
• Total Scaffold Genes: 215
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (46.05%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001040	Metagenome / Metatranscriptome	795	Y
F008051	Metagenome	340	Y
F013175	Metagenome / Metatranscriptome	273	Y
F014118	Metagenome / Metatranscriptome	265	Y
F017098	Metagenome / Metatranscriptome	242	Y
F036587	Metagenome / Metatranscriptome	169	Y
F040622	Metagenome / Metatranscriptome	161	Y
F091629	Metagenome / Metatranscriptome	107	Y
F102573	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172367_10000057114	F001040	N/A	MAVSYNKYSMQTIIRYNGRLVDVLDRIRAISLVLMVHIEQDLGKDKELITIKVMTPYAPRETYKALRQACLGKIETLKDMTLRESTLTKLF*
Ga0172367_10000057119	F040622	AGGA	MKTPNLKFILETLLQDQPKPMTREEKQAFVQEIANFSAMSDGVYGKGDLEQIVERVKQIVDRADKIMTESDDWMANVAHKKGNKRMHEDYRDFEQAARDLKEAQDRMAIAYENIGQHLNRYFEVG*
Ga0172367_10000057145	F013175	N/A	MDTKTLVKALKVAVREVIKEELTEILREGLQSTISEMSQPKKQAKVDVNKVIQVQPKMVSESGKKQKVLFTENRWADILNETDSLSEQEPMAMNSFKDIMNEGMDEIRMTSRDAVNFGAMRQNMKEAMGITPAAPKVMEDPETGKVFEVPQEVQQAMTRDYSALMKAINNKKGK*
Ga0172367_10000057164	F017098	N/A	MDREQLKQSIMNNLTNSDAEQTRWDSLQPTDSEYMMHSPIPVGYNTTAEQRFLMQNLLVGFGGGSLLDIGCGRCDLYGVARDLAALNNDIVMYNAIDHNPIMTQLGEEKWGLDKVSIGAFETAKLDKHEWVVASGVFTQRRCETEDDDLRKLFTDIDILYDLSTHVVSFNLLNPINTQHHEGFFYVHPGLVMDMLIEKYQFVNIRCNYSKDVYTVLIYKLQ*
Ga0172367_10000057189	F014118	N/A	MAVGKKNSGFFKQDAVAARMLADAKRPQQLNAAVKQAMAQAERNRIYREARAALQKPRFIK*
Ga0172367_1000005720	F036587	N/A	MGKKSAHTGMSPKDRSAILMDKFITKNLKRNKNMPVLSGIRKDPNIPIHMWPLQDQIEYWENRTDADRFNDKYPIYSFWLDEVKQRSKVHPTFFISKINKLGDMVKEMYASKTFPRDAVNILKTHGLY*
Ga0172367_10000057208	F091629	N/A	MNLENLTPEEQEQYNQFLQQFMKSIDPTDYLPPSVREIARMDMDTLKQEYDMVQDKTSERSSTQRKLIAERYEYELSKQKDVENGAE*
Ga0172367_1000005726	F102573	N/A	MLSYNISKPVYSDIQISKPLPDDVAEHVLLNYTCHVDHEGFDLNEIEQAYYAHNNISLEHDTTWYKDGDAAKGAHAIIQPWLTQHEQSALILDHSQFVFRYPLSGDAADQVRRYAKQRPELLRILSTSFKCGLDLCIDYIDDDRVMPVVHIEWDYANVSDMLVDVSYVETVLEYTDWNEIISVIKRFNRLSKHSLDAFQQADFRSMLLFGCKSYKLIPTL*
Ga0172367_1000005774	F008051	N/A	MIETLGWFSTALVLAGYISNARGWTKAAMITWIVGDTGWITYDFFIDNYSHLVLSLVIIAINVYGIYRLLKKS*