Scaffold Ga0172374_1016066

Overview

Basic Information

• Taxon OID: 3300013122
• Scaffold ID: Ga0172374_1016066
• Source Dataset Name: Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3583
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Democratic Republic of the Congo: South-Kivu
• Coordinates
  • Lat. (^o): -1.64
  • Long. (^o): 29.05
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y
F008241	Metagenome / Metatranscriptome	336	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172374_101606611	F008241	N/A	MMETPNKEKETTTMARNGKAINVKIATAKVIKALETKLAQIKADYAKQDENEAKYQKAKDKWSKEIAKFAVANIAKAENLRTNYRSWNNTLNV
Ga0172374_10160662	F005348	AGG	MINSVMRFDCDECYGSGLIFWGNDLDYDVEKCQCEDFALGTLFTTREAD*
Ga0172374_10160666	F000808	AGGA	MDKEYTYALTTSYDGELVHTLRVSDMLTAVDAWTKCVDHGTAKEYATYNLSDPTGKMYTKTFYANGKVSIK*
Ga0172374_10160668	F003393	GGA	MRTIEKDDIIPIMDYVKADILNAGQLMVDDLIIINDEVVSIVDIESLADGYILEIVNDFGEREHVEVAEFDQFDLMLLQ*