NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172278_1561

Scaffold Ga0172278_1561


Overview

Basic Information
Taxon OID3300013121 Open in IMG/M
Scaffold IDGa0172278_1561 Open in IMG/M
Source Dataset NameActivated sludge microbial communities from Jimei wastewater treatment plant (WWTP), Xiamen City, Fujian province, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)232355
Total Scaffold Genes207 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)121 (58.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Jimei Wastewater Treatment Plant (Wwtp), Xiamen City, Fujian Province, China

Source Dataset Sampling Location
Location NameJimei WWTP, Xiamen City, Fujian province
CoordinatesLat. (o)24.25Long. (o)117.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105218Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0172278_1561100F105218AGGAGMRTSRKLTHALLAVFTLVVMSSFALAADPGLQYPPTSEVSDQKAGSVLIYNIYSSGATSGNTENTRINITNTSSQRAAFVHLYFVSNGCSIADSYICLTANQTASFLTSDVDPGVKGYIVAVAVDGVLGCPIRFNWLIGDEYVKLASGHAANLGAEAFAAVWTAAEGEGEVARVPGCDPNSVTATINFDGVQYNRVPAVLALSNLPSRADGNDTMIIINRIGGNLGIGASTLGSLFGLLYDDAENVLSFSVTGGCQLMASISNNFPRTTPRVETFIPAGRSGWMKIYNQTGAIGILGAFINKNDNAGASAGAFNGGSNLHKLTLTPTSTYTVPVFPPSC*
Ga0172278_156199F105218N/AMSSFALAADPGLLYPPTSEASDQKAGSLLFYNVYSSGATSGNTENTRINITNTSVTSAAFVHLYFVSNGCSIADSYICLTATQTASFLASDVDPGVKGYIVAVAVDGVLGCPVAFNWLIGDEYIKLASGHAANLGAVAFSALYNGIVPGCDANSVTATINFDGAGGYNRTPAVLALSNLPSRADGNDTMVIINRVGGNLGIGASSLGSLFGLLYDDAENVLSFSVTGGCQLMASISNNFPRTTPRVETFIPAGRSGWMKIYNQTGAIGILGCAINKNDNAGASAGAFNGGHNLHHLTLNNTMSYIVPVFPPSC*
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