Scaffold Ga0157370_11918534

Overview

Basic Information

• Taxon OID: 3300013104
• Scaffold ID: Ga0157370_11918534
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 531
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008279	Metagenome / Metatranscriptome	336	Y
F077536	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157370_119185341	F077536	AGG	MIMPQADCPATGFRPFFNPATGEWITYTALAEDSDGQLVRFTWRSVPG
Ga0157370_119185342	F008279	N/A	PAGPEARRIERSVTIATVLELVAAFVLPVVVIAAGRSDWVLPSIVITIGPLLLWLDHLVHIPRYRPVGWALIAGPVVLVATMSGSALAVTTGLAAGVVLLGTAAAGFHDLAGLRPASPSRAGLSTKAG*