Scaffold Ga0164318_10301274

Overview

Basic Information

• Taxon OID: 3300013103
• Scaffold ID: Ga0164318_10301274
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1421
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0183
  • Long. (^o): -111.3802
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164318_103012742	F051547	AGG	MIDPLLIATVSVIGGAVLNTVRGFLGSDETTYDIKKFFGALIVAVFAGIAVAQTLTVAGLGIVESILIGLSVGFAVDFAVSKAKTTE*
Ga0164318_103012744	F071758	N/A	MELEGKCSQCKINKYGYTDGIHSIYICFKCGRFDGISGGDETFIEKIQEEPMALLMMIEQKILVPISGL*