Basic Information | |
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Taxon OID | 3300013103 Open in IMG/M |
Scaffold ID | Ga0164318_10213779 Open in IMG/M |
Source Dataset Name | Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1737 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Gulf of California | |||||||
Coordinates | Lat. (o) | 27.0183 | Long. (o) | -111.3802 | Alt. (m) | Depth (m) | 2000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005129 | Metagenome / Metatranscriptome | 411 | Y |
F051139 | Metagenome / Metatranscriptome | 144 | Y |
F072257 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0164318_102137792 | F005129 | N/A | MNYKVKIDDRSLSINLMHRSIIDLGIFTVKATTHTFLFEAKDTDWGADINETELEFYVNDKRCKYVGFKELYTQLYGNSFKTFEADIIRQTEEMVAKQIVKEYPGTDVNF* |
Ga0164318_102137794 | F072257 | N/A | MEELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDDYEFFKRNWCVSDRSLTAFYKQMLYTFPIECNKTSTLTFINKCMWAYHSAISSHDEYKEPCRRNTHCKR* |
Ga0164318_102137795 | F051139 | N/A | MQKATLELPVKQFHQIYDLLGNILDNESDKFLFNIENSDIELIEDTRNELFNQIPDEEPAETTYAFTTQINAHEITPLKLYKIKRCSDHGSGFLITNDRRSEVYCIEKGCSHLSPNKSEDWNLITITNK* |
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