Scaffold Ga0164318_10213779

Overview

Basic Information

• Taxon OID: 3300013103
• Scaffold ID: Ga0164318_10213779
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1737
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0183
  • Long. (^o): -111.3802
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005129	Metagenome / Metatranscriptome	411	Y
F051139	Metagenome / Metatranscriptome	144	Y
F072257	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164318_102137792	F005129	N/A	MNYKVKIDDRSLSINLMHRSIIDLGIFTVKATTHTFLFEAKDTDWGADINETELEFYVNDKRCKYVGFKELYTQLYGNSFKTFEADIIRQTEEMVAKQIVKEYPGTDVNF*
Ga0164318_102137794	F072257	N/A	MEELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDDYEFFKRNWCVSDRSLTAFYKQMLYTFPIECNKTSTLTFINKCMWAYHSAISSHDEYKEPCRRNTHCKR*
Ga0164318_102137795	F051139	N/A	MQKATLELPVKQFHQIYDLLGNILDNESDKFLFNIENSDIELIEDTRNELFNQIPDEEPAETTYAFTTQINAHEITPLKLYKIKRCSDHGSGFLITNDRRSEVYCIEKGCSHLSPNKSEDWNLITITNK*