Scaffold Ga0164318_10029152

Overview

Basic Information

• Taxon OID: 3300013103
• Scaffold ID: Ga0164318_10029152
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5317
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0183
  • Long. (^o): -111.3802
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F040421	Metagenome	161	Y
F055335	Metagenome	138	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164318_1002915212	F072934	GGAGG	MVEIDIDKLLADEEIREKMNEWGREKAKRRLESMKNLSEPYRRYLEKIASGVWKVW*
Ga0164318_100291522	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVNYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*
Ga0164318_100291526	F014691	AGGAGG	MSKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPALTSFLPYLALVVILAMAIGVFLSLVRGR*
Ga0164318_100291527	F040421	GAGG	MREEGVRAITMLTLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLGEVIEKWVKRRELRRK*