Scaffold Ga0164313_11451102

Overview

Basic Information

• Taxon OID: 3300013101
• Scaffold ID: Ga0164313_11451102
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 553
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0151
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053973	Metagenome	140	Y
F090253	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164313_114511021	F053973	AGG	MNKDKFHFGATSVMREVPPGKTAVIQFNGKLEEIETEWGAKMKYPILLVSHPSYECISKEGIETVWQSNS
Ga0164313_114511022	F090253	GAG	MVARRRKVRRSRARKTFSIPLIETGAGIALVSQSGLGTHLRTALDGNVEGALSGLNASIQENKNLMIKTLGTAFIAKAVV