Basic Information | |
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Taxon OID | 3300013099 Open in IMG/M |
Scaffold ID | Ga0164315_10246989 Open in IMG/M |
Source Dataset Name | Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1455 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Gulf of California | |||||||
Coordinates | Lat. (o) | 27.0151 | Long. (o) | -111.3798 | Alt. (m) | Depth (m) | 2000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F060433 | Metagenome | 133 | Y |
F071758 | Metagenome / Metatranscriptome | 122 | Y |
F102085 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0164315_102469893 | F060433 | N/A | MEMFSSVLEPLLLAALIGMGSGLFAFFRKMSNTQRDLCETVQRLQKTLIILAKAVDRQSNRLHPDEANSELDDLVKELLDK* |
Ga0164315_102469894 | F071758 | N/A | MELEGKCSQCKINKYGYTDGIHSIYICFKCGRFDGISGGDETFIEKIQEEPMALLMMIKEKILVPISGI* |
Ga0164315_102469895 | F102085 | N/A | MATSIYIFDSDKMFKSIYREHVDDLEHKMPLIDLYVKGQKLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVIHGKVRYNHKKNQLEFFPRKLRKPLLSMRVGRYFGYKKGKCNINYDKRYYDF |
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