Scaffold Ga0164315_10166841

Overview

Basic Information

• Taxon OID: 3300013099
• Scaffold ID: Ga0164315_10166841
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1794
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0151
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F024797	Metagenome / Metatranscriptome	204	Y
F040126	Metagenome / Metatranscriptome	162	N
F049672	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164315_101668411	F008425	N/A	MKKDKDVTYKQFIAHMDKGNKVYMKKPRSWQKVWFWWESKKEKWFLNKAFDKREDGIVSPEPSVWITAKQMESHMDHMVRMGYKYYINE*
Ga0164315_101668412	F024797	N/A	MSEFFRTSMGRKLLEKDIPKLTSVLERIANQMELSNKIEEKKFRLDEKIKKLQIKDINEKG*
Ga0164315_101668413	F040126	N/A	MKKVPLFEDFIPVGFATDNAAQFSLGGVSNTETGYNMDAIVGPVEQCSNHVAEQANSYETNDNAEHTAEAYIKEAKKHINDKIDEACENYSAMDESTLNEGTDISSWNQAGIKGDANAQITTFAGPKDIESFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV*
Ga0164315_101668414	F049672	N/A	MIPKFNKYLNEASDYEFKPNEAAARLKAREKENIQRYRAAQDRGDNFAIALYELKIKMDKIDLEGLKVQTEIHKLKQKFGK*