NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0164315_10140942

Scaffold Ga0164315_10140942


Overview

Basic Information
Taxon OID3300013099 Open in IMG/M
Scaffold IDGa0164315_10140942 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1960
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0151Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029898Metagenome187N
F033643Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0164315_101409421F033643N/ANPGFNMIFANGWEISVQWGRDHYCANKDNQNKKSCRSRTAEVAIFAPDKDGFPRDWWSYDEDINEVVEQPQKTCVNGHLTTDQVANIIAIISKKSA*
Ga0164315_101409422F029898N/AVLDFTGQIGYTIDSVMRKIIEMIKKIMKKDAVRTQELKYQREYDGEVNNYFVNIFEEWADHYVAYTYDKHGANCGVKRFNKGNIQEMKPAERNFAFVTA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.