Scaffold Ga0164320_10052259

Overview

Basic Information

• Taxon OID: 3300013098
• Scaffold ID: Ga0164320_10052259
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1675
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.009
  • Long. (^o): -111.4081
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086307	Metagenome / Metatranscriptome	111	Y
F096226	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164320_100522591	F086307	N/A	MTNASAIRDLLSMLHEEWLDEGRKKVIKVMLEDMIDRMEDNLSMDDMR*
Ga0164320_100522593	F096226	N/A	MMIRKKIMSLSRKDLESIICIACGKRYGEHTKGNGTKFNLPSLMECMFRIQGTVVADGINDAPTSILDSKYVPPSEPVCELDYDC*