Scaffold Ga0164320_10003655

Overview

Basic Information

• Taxon OID: 3300013098
• Scaffold ID: Ga0164320_10003655
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5799
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.009
  • Long. (^o): -111.4081
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F051547	Metagenome	144	N
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164320_100036551	F034394	N/A	MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREIHDLPLLYTFGWGTPLFLQHRNIQILNTSLGDKIEIWKGESNEWENIIDSPQWYHAEYEYGRIYVRGFLFTILRKNRVRVTYRYGGENYAGDTVIPLDITDCVIKMASIEIMNTSFRMDEIPSGGSVSPSESKRFWQEDIDICISNRREVFVIP*
Ga0164320_100036552	F087902	N/A	MVEMNHNAITVGADTTIKGAHGVVVSVHVTKAGASGDKVEFRNGTANSDAIEFTVYGEGLQNIQGINRRFEDGIRADVTGSTAQYLVVFK*
Ga0164320_100036553	F016619	N/A	MAITIVHNADHKSLTGKTLSIQSELTSKLKTTIVDVTYAAGDNYATNGNTVDLSLGSRINTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSATATVVALEELDNADTAVNSMTIRIRVIGF*
Ga0164320_100036557	F051547	N/A	MIDPLLIATVSVIGGAILNTVRGFLGSDETTYDIKKFFGALIVAVFAGIAVAQTLTVAGLGIVEIILIGLSVGFAVDYAVSKAKKTE*