Scaffold Ga0164297_10113632

Overview

Basic Information

• Taxon OID: 3300013094
• Scaffold ID: Ga0164297_10113632
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1126
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019600	Metagenome / Metatranscriptome	228	N
F031767	Metagenome / Metatranscriptome	181	N
F033705	Metagenome / Metatranscriptome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164297_101136321	F033705	N/A	MEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLIKEEANRLRNLKLKLNSIRKLVEVNQANSRKLTQIFQENQNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMIQVQIQLN*
Ga0164297_101136322	F019600	N/A	MYDPSTDTTELERSTKGYDLEKSLKEAKETVYEGRKAVEELISSVTQLVYEEDRRRKEFTEILATIQAVLNTVQSKCITVYWRHNEDTTLTSSLKKLNKEILKVTSLVSSSNIEEMKEIIEDLANWELNEQ*
Ga0164297_101136323	F031767	GGA	MNNNSINQPKIIVVKRLERKPRQNYIKTLATLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNE