Scaffold Ga0164297_10087675

Overview

Basic Information

• Taxon OID: 3300013094
• Scaffold ID: Ga0164297_10087675
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1349
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F065442	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164297_100876752	F010759	N/A	MEGALRSPFPLAINRYMTTHDEFANYHDKSQLEGPDPEFNQDAHRWDKGGLATTENGIADRLLQNDTLYNTLKGDWKREDFNLSKNIKVTTGREGGKMYLTREQLNVPAIMQHCQEYRARAEAGFMDPLAPIMPDGKLGYKWMELPEVMSFEISNKYFGGMPWAAIKRDRTLKAQFYKVVEQEYNSFVCYPGGKLPIPVDVPYPNPMGSDKFFKGHRA*
Ga0164297_100876753	F065442	N/A	SYTSSLQQFAPSLYKQLVTTAEQRFNAKIRTIVCPTSLRTHLSDTMPTSRSINRVNSERGDTIATYEGDFNYTYEIFDSWIMDQVGVGNQIYFLNEEVLQWGSLRDLGPNNEVFSNADASLDQFILEGTLIVRNPAGVAVLHDISPNGTYVGVNPSTGASGSLRSTTYVQRLNAWDATSF