Scaffold Ga0164297_10080318

Overview

Basic Information

• Taxon OID: 3300013094
• Scaffold ID: Ga0164297_10080318
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1436
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033624	Metagenome / Metatranscriptome	177	Y
F096160	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164297_100803182	F033624	GGAGG	VAVVEIGMSPGDIAFATTEAVARFNFNRARGNDASHGKAPTWVEQVAREISGCLGEIAIARWQDKYPFALFEERKMGDVGPFEVRTTAYATGKLLVNSDDNPERKYLLVTLPSYDLALIHGWVYGYEAQTELHYNTSMRAPVYAVKQEYLHSPESLLHG*
Ga0164297_100803183	F096160	GAG	MAELWFEEASDVASQVARVVHRKYQVYFDVADVRQELLAWVWRREDKVKQWLDKDQSPEDYKGGVKQLGKTLTRQADKYCRRLKAQKLGYEIRDEQYYDPITL