NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0164297_10058870

Scaffold Ga0164297_10058870


Overview

Basic Information
Taxon OID3300013094 Open in IMG/M
Scaffold IDGa0164297_10058870 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1811
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038207Metagenome / Metatranscriptome166N
F094975Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0164297_100588701F038207N/AMTETEPKKFYKKMSFHIFVFVAILVFIFLALYCLGYFSSPSKMEVKSPNQAVSYQNNMQKTMDRLKELLLGDNETQEAGKKNEFLEKEIKEIAEKFTMAAPSNPSKFERRVKRAAKVGDAVISEFLTKIQASIARQEESIEALRVCLKVLMKKGKEGHPSVALVQERVVAHNRESDLCRMLLEDVNFLKLKLEGDKEESLFELTNVEIPLQPPNKLLLHSPKEELY*
Ga0164297_100588702F094975N/AAANKKVGELYQEYQMQIAPLPNGNLVFEYGATDPAISIKEYTLMETLLLNYTACYEGLNPYVVKRRTVHGIQTLILKPESEILASQGQEAYYHCIKTVAAVSLAALIIQEPFFSIFNGFLGSLGFDVDIFVPYLKTPAWITETVVSFQFQAGHNWLLNSKSYEEIMGRVRSGYFHKPSSRRFNPLELVSIGKRQALSQEGNQVKRSRGTEIQKAHVFANFQMEVIPTKASASVPEMEIGHTEASPSVSRVAEKKETEEKETVHLS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.