NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164297_10041280

Scaffold Ga0164297_10041280


Overview

Basic Information
Taxon OID3300013094 Open in IMG/M
Scaffold IDGa0164297_10041280 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2378
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016499Metagenome / Metatranscriptome246Y
F051683Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0164297_100412801F051683N/ADDDFTDEITTANLAQSYVSIKNMLKNGGSWHEDDVAAWKELLPAIKLVGNWYSIDFNADIKQAKKAPTR*
Ga0164297_100412808F016499AGGTGGVATKKPSPNKKIFTKEMAQTVLDLGKQGASQKAMYAAIGISKTTASKWKQEDPEFAETMDLATTYGQAYWENMMLANIDNRGFNSRVAEIALRGQYPDDYKDNREVKATVKQEVTIDFNKEIADLIAALK*

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