Scaffold Ga0164296_1014192

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1014192
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5566
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049367	Metagenome	146	N
F072993	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_10141923	F072993	AGGA	MSSTTISRGNILEQFVIAPNLTPAALTTSSTQSLQTFAIAGLQASDIVTFLQYQGNQTSNIIISNCDVASAGVLTVQFQNTSGAATAITPASGVYDFKVHRVEGSPVATNAA*
Ga0164296_10141927	F049367	GAGG	MALKINIEQTQFGAPAPEAYARVTNFFGNKDNIQVQVSVHFSKDARDSNLSPVLEHAHYIGLADLAGKGELMTAIYEVLKTMSQYQGATDV*