Scaffold Ga0164296_1010446

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1010446
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7028
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F046110	Metagenome	151	N
F048063	Metagenome	148	N
F055384	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_101044610	F048063	N/A	VKWSNQKIIDQKIAEYGSLEAFQKAYVSRGANKKPKVKSSLLKDGEVDLMKSILEEGVKLAPQSSLSTKHMSNEEYVKHYESKVRALEEAGASAAEIGWMKQRLERWRG*
Ga0164296_10104467	F055384	N/A	MKIMITKPTNTFLAAEHPTWIDLQVGTVMEVRKEGQTGYLVDHPIIEGDCVVPKTNCIVVRDEVECCVTL*
Ga0164296_10104468	F021232	N/A	MKMKQLKQTYIIFLRNDQVYCTAESYDLANEIIEADGLVDATIQVVNHITNIKEGNPVTISYENTSTYDCTSDDVNDVRHKDHY*
Ga0164296_10104469	F046110	N/A	MINRFDESLMHLHDQLSSITAHNVPVSLVNTIEQQVLLIQARQAYVTGHKQSYELILRELMEHIQLKLTGKN*