Scaffold Ga0164296_1003010

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1003010
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16223
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F008414	Metagenome	333	Y
F017967	Metagenome	237	Y
F028086	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_100301023	F008414	AGGA	MAQVIIYENNGQVAVCIPTGLLDIQTVLAKDCPAGAIIVDDSTLPQGSDAQFFDAWVLNGTTVSVNFSKAQADKLAQYNADALQVANKRNLNTLAGIANAVSDADWQAQLTADRASIAAATTTAQLTAIANPS*
Ga0164296_10030105	F017967	AGG	MAIKYYVKAAVSEYVDQSGTTKKRYNTIGIVTETKKGDLMMKLEMIPLLGLKEGTLWCYLNLPEDKPEGKTASPSLEAIDDDIPF*
Ga0164296_10030107	F002539	GGAG	MNEHIWTAAGTDITIRWKLNGWVAPSDVQGYRDKWRYYQNLPLRQLDDAAKEQYEQVLRKAKVMRIK*
Ga0164296_10030109	F028086	N/A	MTEEKIPFVGSMKVPDGEIEEAFFALYPDFFYENSTALTLWIQAWQAALDWQENSKPRIQLI*