Scaffold Ga0164296_1002782

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1002782
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17027
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F080800	Metagenome	114	N
F102438	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_100278210	F002539	GAGG	MAKNEYIWTKAGTDITIRWKTRHNWVPPSEQQEYKDKWRYYQNLPIRALDADAREMYEVALQKAKVARIK*
Ga0164296_100278218	F102438	AGGAG	MFDFEKPYKQYEELIERVRQVNEFWLNSVFYSIKEFFKIK*
Ga0164296_10027823	F080800	GAGG	MVDRSNLNPTERRQISEVKMLMVKMAQLNIKNIFPSLSIKSEKVHHTKSLSHTRKGSGRKHQQGK*