Scaffold Ga0164296_1001876

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1001876
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21667
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y
F037031	Metagenome / Metatranscriptome	168	Y
F052345	Metagenome	142	Y
F102399	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_100187620	F037031	GAG	MTTDPYDLPGIRPEDVKQTPAQIAQVNAYLAQQKAEEEALGKEQPIELMESELMGVWKLLQELQDKYGYRKGSFENLTSMRNEADEKFALLGFQVVVDWVMPGISSTPTPPTITIVGRIDGSVFNNEQNRYETGKGVADTYYEAKRASLGMSSKKLILPGM*
Ga0164296_100187624	F052345	N/A	MTPTTADLLSEEIDGEIFLYKYSPLCKICNSSDELKSIIDSLLLFPKTYKEVLTLVQPLQDKLGIEGSDRINYENIRNHQKNHLPFEKKIVRDIVEKRAREKNRSILDAGERGSAGLLTAEAFYEIIVAKGFEDIAQGYEKPTLTQTMHAMEMLQKLEKEGQDNYRPEDLISQLDVILLAIRDTLPSDMKEKLFNKIEEYQNGSVDVPGKPKKLKQADFGEEYIDVDLEEDF*
Ga0164296_100187626	F027396	AGGA	MDDDLPKKRKSRIQEVVRGQMTWQILERILNNYWEWYEVYLTSGNPELQLLNGITINIYDVMKGIDRLPPRQKQAVVLSCLENRKEVEVARMMGFTKWSSQVGMYKRKALQQLCRTVWSTEID*
Ga0164296_100187627	F021233	GGA	MSSYSGFRKGLEGLTEPELDVAHDDKFGDLHRFVVRSFRWESKPEEKEMLDSIEQIVSSFMQEYIDPAEVIIARFNSGGDIGGSEGDRLFLNLQSSLVAIEEEVTRRYLKAQFSYYMLDDKYNTSYVKHAKGTTNDLNARARMETRDDRLFYFVQYSAWRIINDKVNSLKATQRHIQNQLYRNSYGR*
Ga0164296_100187629	F102399	GAG	VSFLDRTLAAYQNDEPITRYIEEALMLGDVFPEEYPVKVYNKERKFDNMYHPSSDVSAGELQLYYRFHPEKRLSLQEERITPTLAMTFQVGSVFHSVIQNLLIHLGFTTLDKVEVKFRNEERMVAGAVDVLELITPDGESFLVDIKSTNQLPKEASYQYAMQLRTYQDNCPGAPDRMALLFIQKAYPHKIKTIEVKKDQDELDKVYDKWDRVRVAIKNNDPSGLKHCCNGPTDEVFLGCPARKICHYYN*