Scaffold Ga0164296_1000999

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1000999
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31650
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (81.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021093	Metagenome / Metatranscriptome	220	Y
F032163	Metagenome / Metatranscriptome	180	Y
F062705	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_100099921	F062705	AGG	VKKENNVSDLRLVQVFLSQTQNPGPGIYEVSSNESGDLFCTCPGYRARSVCKHTKFVNARIDSNKGHYPLEISSRATEEDTDKAKRSNQDFREFVIRFGKIEVY*
Ga0164296_100099928	F032163	N/A	VNDDLIDSTFADLDDYYPGSKRKRKNIEPKKPEIELDTSWDSKPYIKTLPNGKDVEMFTIGALAAALGRPVITIRTWIKEGYLPASPYRLPAKKDVNGEDHQGRRLYSRAMVEKVIQLFDSTGVLYLKRIEWPMHRQLSNEIAEAWSQIRAEETK*
Ga0164296_10009996	F021093	GAGG	MGNGFIVAEDLALKTLLSGITVSDDSNASRPVKVWFGYPDLEIRDQSFPFITIDLIDILQAQERQTAGTLVDSDYQGTIASQAGYGYSYNIPVAYDLVYQITSYSRNPRHDRAIIYQLLNKFPSKYGYLTVPNALGTENSVRSMFLDGFVKRDAVASETGNRRLLRNVLSVRVVSEMTPAQVAATPLVDYVDINATTSSIPSTLTPVPPNVNP*