Scaffold Ga0164296_1000585

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1000585
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42396
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011665	Metagenome / Metatranscriptome	288	Y
F015338	Metagenome / Metatranscriptome	255	Y
F032649	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_100058513	F032649	GGAG	MDERIEKAMDVANYMATLSNQRRIILEEYNQKLIYYINGATFKISPELINFTKTVLDIGHAEDVAFLDSNNFPVIINNVQKFFDDITLIYFESTNNYAAKYAEIKRKRKISDIVEL*
Ga0164296_100058524	F015338	AGGA	MALKNGKPNPLDYYGLRRVEFACPHFKYTTIDKYNPTVIKSVDNWIRKNLNNRYYIGQGITLDNTNTLVYNTRIGFESEKELSFFTIACPLLQTR*
Ga0164296_100058529	F011665	AGG	MQNQINLTPITQFVQILRAAELSNSKELKIPIQQARLLSMALSEMQDKLIQDYESMYNQLKQSIETEVVTVELDGGGFEDK*