Scaffold Ga0164296_1000049

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1000049
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151073
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015338	Metagenome / Metatranscriptome	255	Y
F029334	Metagenome	188	Y
F032649	Metagenome / Metatranscriptome	179	Y
F034037	Metagenome / Metatranscriptome	175	Y
F035629	Metagenome / Metatranscriptome	171	Y
F093229	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_10000491	F029334	N/A	EAGIFAFAAAMDAQRRNSNNKSLYSQEQVRKAVTARDLIDTAFAYTKLYINYRKTFIAVKAEGARRKDSMAREVLALFESNGYGVVSTPQGLIVRIDK*
Ga0164296_100004910	F034037	N/A	MPTYRNWDYVPVLHDFEYIANIAWPGRALEQLDWIVGITGVEFWLQQYVGSKYSRWAWNMATDCYDISVAFKYDKHRTLFLLEYS*
Ga0164296_1000049107	F032649	GGAG	MDERIEKAFETANYMATLSNQRRIILEEFNQRCVFYKNGGTFLITPKLLSFVKMTIELGHDEDVSFIDSNNFPVEIKDVNEFFSEITDRYYSALNDYSAKFTEIKSKRRIKDIVEL*
Ga0164296_1000049117	F015338	N/A	MAIKNGKPNPLNYFDLRKVRFASPHFKYIILDKFNPTYFSSLEDWINKNLNNRYYIGQSLMLDNKNTIIYCTKIGFESEKELSFFTIACPLLNQR*
Ga0164296_1000049129	F093229	AGGA	MNPQIPAEGILIKKDYGDAKIYEIVCECGDCNHSHTVWVEAEDIGVNVTIYTQQKTKWWKLNRWQKIWTLLTKGYIEVESNLIMGKQQAFNYAHTLLSAIEDVEQFKKEKNEQD*
Ga0164296_100004924	F035629	GAGG	MSEKIELKEKILAVDQNVRELWDAMDPEQQKSLKNEFFILNRYISNAKGESTEIQEHFVLSVNEYFNKNWSSLSKHPKLLWILLCMCSYDGKKKFYHEWIGKKREAGGTKKEKLLAEFRPDLCDQELELLAKMSTDKEVKDLARQYGWDEATIAKKLK*