Scaffold Ga0164296_1000048

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1000048
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151369
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 112 (76.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F023777	Metagenome / Metatranscriptome	208	Y
F029334	Metagenome	188	Y
F090382	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_1000048120	F023777	N/A	MAVKSWYLSIIDSSTHKPVLHKMFFTAPVMNAFIKEQEILEKYPKPQYYIVKENY*
Ga0164296_100004813	F000652	GGAGG	MKTVRVETLLTQELEVPDNWEREDVFDFLAENQSFRTAFQGVSNEEQTARIVDLGVVEEKVTEMGEEAYDE*
Ga0164296_100004822	F090382	AGAAGG	MIRIAPTLNPLEVMLVAAHYEERGVEHYTLSQGNDCIWAYYGAINEYFIFRDGKIVDIQID*
Ga0164296_100004823	F029334	AGGAG	MKELDTKEAGGFAFAAAMDAQRRNSNNRSTYSIEQQRKAITARDLLDTAFSYSKLYINYRKKFIAIKAEGARAKDAMAKQVICLFEANGYGVVSTPQGVIIRIDKR*