Scaffold Ga0163199_1075344

Overview

Basic Information

• Taxon OID: 3300013092
• Scaffold ID: Ga0163199_1075344
• Source Dataset Name: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014617	Metagenome / Metatranscriptome	261	Y
F020346	Metagenome / Metatranscriptome	224	N
F080030	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163199_10753441	F020346	N/A	SLTTSPGGDATLGTLMYAAALWRSRGSIETAFAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0163199_10753443	F014617	AGG	MTYTIASSKLGVIGEPFIPADGINVAALLEGGFIVEQSTSKSTKPAKTNTEPNEEI*
Ga0163199_10753445	F080030	AGCAGG	MRIKLKLVRTIGAEPEYLYTTLFSTALWEEKFNKKPMDAEQSGWRDWSFWAYTLLKVKGEKLPDDFMKWLEENPEMTVLPEADMTNPNPTDAAPIDG