Scaffold Ga0163199_1017204

Overview

Basic Information

• Taxon OID: 3300013092
• Scaffold ID: Ga0163199_1017204
• Source Dataset Name: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3697
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F004051	Metagenome / Metatranscriptome	455	Y
F043940	Metagenome / Metatranscriptome	155	Y
F058756	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163199_10172041	F058756	N/A	MTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTNCTLLSVEDATIPYTDSPLPTKEEKMETTETTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVTTLLSKINTVKDIITEAY
Ga0163199_10172042	F002935	GAG	MAERMKGYSGNVLDGKKLAKIANGIYNLQYSSEFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDTYGCLEIPTNIGQMGLWNGRVFISVDTVKACQTIFKEEVSDYIRVFGDRLDSNCSLWQSKMSVAPATIAQ*
Ga0163199_10172046	F043940	AGG	MKNRFRVEIYDANKSNDVTIYSEQGVDKEYLTELAFSNRRNFLGDVRAYVYDTLKKTKTTALYLPSEVINFNRKNKLTRDELGL*
Ga0163199_10172048	F004051	GAGG	MTIDNHTYEVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKTLGA*